[INFO] fetching crate pdbrust 0.7.0...
[INFO] testing pdbrust-0.7.0 against try#0abe69e6c16114311cc2700e972492e64d69c28f for pr-154065-1
[INFO] extracting crate pdbrust 0.7.0 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate pdbrust 0.7.0
[INFO] removed 0 missing examples
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate pdbrust 0.7.0
[INFO] tweaked toml for crates.io crate pdbrust 0.7.0 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate pdbrust 0.7.0 on toolchain 0abe69e6c16114311cc2700e972492e64d69c28f
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate pdbrust 0.7.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 12d5e0ce4f5722120b51fc55978404fd980718eb7d4af9ed212e7b2280a52472
[INFO] running `Command { std: "docker" "start" "-a" "12d5e0ce4f5722120b51fc55978404fd980718eb7d4af9ed212e7b2280a52472", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "12d5e0ce4f5722120b51fc55978404fd980718eb7d4af9ed212e7b2280a52472", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "12d5e0ce4f5722120b51fc55978404fd980718eb7d4af9ed212e7b2280a52472", kill_on_drop: false }`
[INFO] [stdout] 12d5e0ce4f5722120b51fc55978404fd980718eb7d4af9ed212e7b2280a52472
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ff9efed0f3868675a599f210d086ddaa8c23542a4428118f7f3713772ca32079
[INFO] running `Command { std: "docker" "start" "-a" "ff9efed0f3868675a599f210d086ddaa8c23542a4428118f7f3713772ca32079", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling pdbrust v0.7.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.92s
[INFO] running `Command { std: "docker" "inspect" "ff9efed0f3868675a599f210d086ddaa8c23542a4428118f7f3713772ca32079", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ff9efed0f3868675a599f210d086ddaa8c23542a4428118f7f3713772ca32079", kill_on_drop: false }`
[INFO] [stdout] ff9efed0f3868675a599f210d086ddaa8c23542a4428118f7f3713772ca32079
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0abe69e6c16114311cc2700e972492e64d69c28f" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] bbf6dd820d195b5eb37ad680a627637632ba6ac0632cb2904b683f6efb31807e
[INFO] running `Command { std: "docker" "start" "-a" "bbf6dd820d195b5eb37ad680a627637632ba6ac0632cb2904b683f6efb31807e", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]    Compiling once_cell v1.21.1
[INFO] [stderr]    Compiling bitflags v2.9.0
[INFO] [stderr]    Compiling cc v1.2.17
[INFO] [stderr]    Compiling icu_locid_transform_data v1.5.0
[INFO] [stderr]    Compiling icu_properties_data v1.5.0
[INFO] [stderr]    Compiling openssl v0.10.71
[INFO] [stderr]    Compiling smallvec v1.14.0
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling icu_normalizer_data v1.5.0
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling futures-util v0.3.31
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling rustix v1.0.3
[INFO] [stderr]    Compiling getrandom v0.3.2
[INFO] [stderr]    Compiling linux-raw-sys v0.9.3
[INFO] [stderr]    Compiling half v2.5.0
[INFO] [stderr]    Compiling rustls-pemfile v1.0.4
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling clap_builder v4.5.32
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling sync_wrapper v0.1.2
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling indexmap v2.8.0
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling mio v1.0.3
[INFO] [stderr]    Compiling socket2 v0.5.8
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling is-terminal v0.4.16
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_xorshift v0.3.0
[INFO] [stderr]    Compiling openssl-sys v0.9.106
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling tokio v1.44.1
[INFO] [stderr]    Compiling native-tls v0.2.14
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling tempfile v3.19.1
[INFO] [stderr]    Compiling rusty-fork v0.3.0
[INFO] [stderr]    Compiling clap v4.5.32
[INFO] [stderr]    Compiling proptest v1.6.0
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling openssl-macros v0.1.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling yoke v0.7.5
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling pdbrust v0.7.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling zerovec v0.10.4
[INFO] [stderr]    Compiling tokio-util v0.7.14
[INFO] [stderr]    Compiling h2 v0.3.26
[INFO] [stderr]    Compiling tinystr v0.7.6
[INFO] [stderr]    Compiling icu_collections v1.5.0
[INFO] [stderr]    Compiling icu_locid v1.5.0
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling icu_provider v1.5.0
[INFO] [stderr]    Compiling icu_locid_transform v1.5.0
[INFO] [stderr]    Compiling icu_properties v1.5.1
[INFO] [stderr]    Compiling tokio-native-tls v0.3.1
[INFO] [stderr]    Compiling hyper v0.14.32
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stderr]    Compiling hyper-tls v0.5.0
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling reqwest v0.11.27
[INFO] [stderr]    Compiling codecov v0.4.0
[INFO] [stdout] error[E0599]: no method named `assign_secondary_structure` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/secondary_structure_demo.rs:36:24
[INFO] [stdout]    |
[INFO] [stdout] 36 |     let ss = structure.assign_secondary_structure();
[INFO] [stdout]    |                        ^^^^^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `secondary_structure_composition` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/secondary_structure_demo.rs:51:42
[INFO] [stdout]    |
[INFO] [stdout] 51 |     let (helix, sheet, coil) = structure.secondary_structure_composition();
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `secondary_structure_string` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/secondary_structure_demo.rs:66:31
[INFO] [stdout]    |
[INFO] [stdout] 66 |     let ss_string = structure.secondary_structure_string();
[INFO] [stdout]    |                               ^^^^^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `pdbrust::dockq`
[INFO] [stdout]    --> examples/dockq_demo.rs:11:14
[INFO] [stdout]     |
[INFO] [stdout]  11 | use pdbrust::dockq::{ChainMappingStrategy, DockQOptions};
[INFO] [stdout]     |              ^^^^^ could not find `dockq` in `pdbrust`
[INFO] [stdout]     |
[INFO] [stdout] note: found an item that was configured out
[INFO] [stdout]    --> src/lib.rs:323:9
[INFO] [stdout]     |
[INFO] [stdout] 322 | #[cfg(feature = "dockq")]
[INFO] [stdout]     |       ----------------- the item is gated behind the `dockq` feature
[INFO] [stdout] 323 | pub mod dockq;
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `pdbrust::dockq`
[INFO] [stdout]    --> examples/dockq_validation.rs:11:14
[INFO] [stdout]     |
[INFO] [stdout]  11 | use pdbrust::dockq::{ChainMappingStrategy, DockQOptions};
[INFO] [stdout]     |              ^^^^^ could not find `dockq` in `pdbrust`
[INFO] [stdout]     |
[INFO] [stdout] note: found an item that was configured out
[INFO] [stdout]    --> src/lib.rs:323:9
[INFO] [stdout]     |
[INFO] [stdout] 322 | #[cfg(feature = "dockq")]
[INFO] [stdout]     |       ----------------- the item is gated behind the `dockq` feature
[INFO] [stdout] 323 | pub mod dockq;
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `pdbrust::rcsb`
[INFO] [stdout]    --> examples/async_download_demo.rs:13:14
[INFO] [stdout]     |
[INFO] [stdout]  13 | use pdbrust::rcsb::{
[INFO] [stdout]     |              ^^^^ could not find `rcsb` in `pdbrust`
[INFO] [stdout]     |
[INFO] [stdout] note: found an item that was configured out
[INFO] [stdout]    --> src/lib.rs:311:9
[INFO] [stdout]     |
[INFO] [stdout] 310 | #[cfg(feature = "rcsb")]
[INFO] [stdout]     |       ---------------- the item is gated behind the `rcsb` feature
[INFO] [stdout] 311 | pub mod rcsb;
[INFO] [stdout]     |         ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `tokio` in this scope
[INFO] [stdout]   --> examples/async_download_demo.rs:19:3
[INFO] [stdout]    |
[INFO] [stdout] 19 | #[tokio::main]
[INFO] [stdout]    |   ^^^^^ use of unresolved module or unlinked crate `tokio`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0599`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `pdbrust` (example "secondary_structure_demo") due to 3 previous errors
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] error[E0432]: unresolved import `pdbrust::geometry`
[INFO] [stdout]    --> examples/geometry_demo.rs:11:14
[INFO] [stdout]     |
[INFO] [stdout]  11 | use pdbrust::geometry::AtomSelection;
[INFO] [stdout]     |              ^^^^^^^^ could not find `geometry` in `pdbrust`
[INFO] [stdout]     |
[INFO] [stdout] note: found an item that was configured out
[INFO] [stdout]    --> src/lib.rs:314:9
[INFO] [stdout]     |
[INFO] [stdout] 313 | #[cfg(feature = "geometry")]
[INFO] [stdout]     |       -------------------- the item is gated behind the `geometry` feature
[INFO] [stdout] 314 | pub mod geometry;
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `dockq` in `pdbrust`
[INFO] [stdout]    --> examples/dockq_demo.rs:97:35
[INFO] [stdout]     |
[INFO] [stdout]  97 | fn print_result(result: &pdbrust::dockq::DockQResult) {
[INFO] [stdout]     |                                   ^^^^^ could not find `dockq` in `pdbrust`
[INFO] [stdout]     |
[INFO] [stdout] note: found an item that was configured out
[INFO] [stdout]    --> src/lib.rs:323:9
[INFO] [stdout]     |
[INFO] [stdout] 322 | #[cfg(feature = "dockq")]
[INFO] [stdout]     |       ----------------- the item is gated behind the `dockq` feature
[INFO] [stdout] 323 | pub mod dockq;
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `dockq_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/dockq_validation.rs:39:24
[INFO] [stdout]    |
[INFO] [stdout] 39 |     let result = model.dockq_to(&native)?;
[INFO] [stdout]    |                        ^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0752]: `main` function is not allowed to be `async`
[INFO] [stdout]   --> examples/async_download_demo.rs:20:1
[INFO] [stdout]    |
[INFO] [stdout] 20 | async fn main() -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ `main` function is not allowed to be `async`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find `summary` in `pdbrust`
[INFO] [stdout]    --> examples/analysis_workflow.rs:129:31
[INFO] [stdout]     |
[INFO] [stdout] 129 |     let csv_header = pdbrust::summary::StructureSummary::field_names().join(",");
[INFO] [stdout]     |                               ^^^^^^^ could not find `summary` in `pdbrust`
[INFO] [stdout]     |
[INFO] [stdout] note: found an item that was configured out
[INFO] [stdout]    --> src/lib.rs:308:9
[INFO] [stdout]     |
[INFO] [stdout] 307 | #[cfg(feature = "summary")]
[INFO] [stdout]     |       ------------------- the item is gated behind the `summary` feature
[INFO] [stdout] 308 | pub mod summary;
[INFO] [stdout]     |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `quality_report` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/analysis_workflow.rs:47:28
[INFO] [stdout]    |
[INFO] [stdout] 47 |     let report = structure.quality_report();
[INFO] [stdout]    |                            ^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/dockq_validation.rs:93:24
[INFO] [stdout]    |
[INFO] [stdout] 93 |     let result = model.dockq_to_with_options(&native, options)?;
[INFO] [stdout]    |                        ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `rmsd_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/geometry_demo.rs:38:27
[INFO] [stdout]    |
[INFO] [stdout] 38 |     let rmsd = structure1.rmsd_to(&structure2)?;
[INFO] [stdout]    |                           ^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `remove_ligands` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/analysis_workflow.rs:69:29
[INFO] [stdout]    |
[INFO] [stdout] 69 |     let cleaned = structure.remove_ligands();
[INFO] [stdout]    |                             ^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0433, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0433`.
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `dockq_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]    --> examples/dockq_validation.rs:143:24
[INFO] [stdout]     |
[INFO] [stdout] 143 |     let result = model.dockq_to(&native)?;
[INFO] [stdout]     |                        ^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope
[INFO] [stdout]    --> examples/dockq_validation.rs:211:24
[INFO] [stdout]     |
[INFO] [stdout] 211 |     let result = model.dockq_to_with_options(&native, options)?;
[INFO] [stdout]     |                        ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0432, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `pdbrust` (example "dockq_validation") due to 5 previous errors
[INFO] [stdout] error[E0599]: no method named `dockq_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/dockq_demo.rs:29:25
[INFO] [stdout]    |
[INFO] [stdout] 29 |     let result = native.dockq_to(&native)?;
[INFO] [stdout]    |                         ^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/dockq_demo.rs:50:28
[INFO] [stdout]    |
[INFO] [stdout] 50 |     let result = perturbed.dockq_to_with_options(&native, options)?;
[INFO] [stdout]    |                            ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `dockq_to_with_options` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/dockq_demo.rs:71:28
[INFO] [stdout]    |
[INFO] [stdout] 71 |     let result = bad_model.dockq_to_with_options(&native, options)?;
[INFO] [stdout]    |                            ^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `dockq_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/dockq_demo.rs:89:26
[INFO] [stdout]    |
[INFO] [stdout] 89 |     let result = swapped.dockq_to(&native)?;
[INFO] [stdout]    |                          ^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `pdbrust` (example "analysis_workflow") due to 3 previous errors
[INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/geometry_demo.rs:46:30
[INFO] [stdout]    |
[INFO] [stdout] 46 |     let rmsd_ca = structure1.rmsd_to_with_selection(&structure2, AtomSelection::CaOnly)?;
[INFO] [stdout]    |                              ^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `pdbrust` (example "dockq_demo") due to 6 previous errors
[INFO] [stdout] Some errors have detailed explanations: E0432, E0433, E0752.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `pdbrust` (example "async_download_demo") due to 3 previous errors
[INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/geometry_demo.rs:50:30
[INFO] [stdout]    |
[INFO] [stdout] 50 |     let rmsd_bb = structure1.rmsd_to_with_selection(&structure2, AtomSelection::Backbone)?;
[INFO] [stdout]    |                              ^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/geometry_demo.rs:54:31
[INFO] [stdout]    |
[INFO] [stdout] 54 |     let rmsd_all = structure1.rmsd_to_with_selection(&structure2, AtomSelection::AllAtoms)?;
[INFO] [stdout]    |                               ^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `rmsd_to_with_selection` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/geometry_demo.rs:58:34
[INFO] [stdout]    |
[INFO] [stdout] 58 |     let rmsd_custom = structure1.rmsd_to_with_selection(
[INFO] [stdout]    |                       -----------^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `align_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/geometry_demo.rs:69:40
[INFO] [stdout]    |
[INFO] [stdout] 69 |     let (aligned, result) = structure1.align_to(&structure2)?;
[INFO] [stdout]    |                                        ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: there is a method `into` with a similar name, but with different arguments
[INFO] [stdout]   --> /rustc/0abe69e6c16114311cc2700e972492e64d69c28f/library/core/src/convert/mod.rs:455:4
[INFO] [stdout] help: some of the expressions' fields have a method of the same name
[INFO] [stdout]    |
[INFO] [stdout] 69 |     let (aligned, result) = structure1.atoms.align_to(&structure2)?;
[INFO] [stdout]    |                                        ++++++
[INFO] [stdout] 69 |     let (aligned, result) = structure1.connects.align_to(&structure2)?;
[INFO] [stdout]    |                                        +++++++++
[INFO] [stdout] 69 |     let (aligned, result) = structure1.models.align_to(&structure2)?;
[INFO] [stdout]    |                                        +++++++
[INFO] [stdout] 69 |     let (aligned, result) = structure1.remarks.align_to(&structure2)?;
[INFO] [stdout]    |                                        ++++++++
[INFO] [stdout]    = and 2 other candidates
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `align_to_with_selection` found for struct `PdbStructure` in the current scope
[INFO] [stdout]   --> examples/geometry_demo.rs:79:20
[INFO] [stdout]    |
[INFO] [stdout] 79 |         structure1.align_to_with_selection(&structure2, AtomSelection::Backbone)?;
[INFO] [stdout]    |                    ^^^^^^^^^^^^^^^^^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `per_residue_rmsd_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]    --> examples/geometry_demo.rs:89:30
[INFO] [stdout]     |
[INFO] [stdout]  89 |     let per_res = structure1.per_residue_rmsd_to(&structure2)?;
[INFO] [stdout]     |                              ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: there is a method `get_residues` with a similar name, but with different arguments
[INFO] [stdout]    --> src/core/pdb.rs:231:5
[INFO] [stdout]     |
[INFO] [stdout] 231 |     pub fn get_residues(&self) -> Vec<(i32, String)> {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `rmsd_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]    --> examples/geometry_demo.rs:134:32
[INFO] [stdout]     |
[INFO] [stdout] 134 |     let self_rmsd = structure1.rmsd_to(&structure1)?;
[INFO] [stdout]     |                                ^^^^^^^ method not found in `PdbStructure`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `pdbrust` (example "geometry_demo") due to 11 previous errors
[INFO] [stdout] error[E0599]: no method named `align_to` found for struct `PdbStructure` in the current scope
[INFO] [stdout]    --> examples/geometry_demo.rs:137:39
[INFO] [stdout]     |
[INFO] [stdout] 137 |     let (_, self_result) = structure1.align_to(&structure1)?;
[INFO] [stdout]     |                                       ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout] help: there is a method `into` with a similar name, but with different arguments
[INFO] [stdout]    --> /rustc/0abe69e6c16114311cc2700e972492e64d69c28f/library/core/src/convert/mod.rs:455:4
[INFO] [stdout] help: some of the expressions' fields have a method of the same name
[INFO] [stdout]     |
[INFO] [stdout] 137 |     let (_, self_result) = structure1.atoms.align_to(&structure1)?;
[INFO] [stdout]     |                                       ++++++
[INFO] [stdout] 137 |     let (_, self_result) = structure1.connects.align_to(&structure1)?;
[INFO] [stdout]     |                                       +++++++++
[INFO] [stdout] 137 |     let (_, self_result) = structure1.models.align_to(&structure1)?;
[INFO] [stdout]     |                                       +++++++
[INFO] [stdout] 137 |     let (_, self_result) = structure1.remarks.align_to(&structure1)?;
[INFO] [stdout]     |                                       ++++++++
[INFO] [stdout]     = and 2 other candidates
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0432, E0599.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0432`.
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "bbf6dd820d195b5eb37ad680a627637632ba6ac0632cb2904b683f6efb31807e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bbf6dd820d195b5eb37ad680a627637632ba6ac0632cb2904b683f6efb31807e", kill_on_drop: false }`
[INFO] [stdout] bbf6dd820d195b5eb37ad680a627637632ba6ac0632cb2904b683f6efb31807e
